Tool name | Amplicon |
---|
URL | http://sourceforge.net/projects/amplicon/ |
---|
Important features | 1. Designs group specific PCR primers.
2. Allows the user to select regions that may be group-specific primer binding sites.
3. Amplicon can import aligned DNA sequences produced by ClustalW or ClustalX or aligned sequences in MEGA or fasta format. |
---|
Citations | Jarman SN. Amplicon: software for designing PCR primers on aligned DNA sequences. Bioinformatics. 2004 Jul 10;20(10):1644-5. Epub 2004 Feb 12. PubMed
PMID: 14962918. |
---|
Year of publication | 2004 |
---|
Rank by usage frequency | 1 |
---|
Comments | Features are written as claimed by the author. Not validated completely. |
---|
Function | |
---|
Category | Downloadable, Free |
---|
Features | Designs group-specific PCR primer sets that amplify a DNA region from a given taxonomic group but do not amplify orthologous regions from other taxonomic groups. |
---|
Description | For relational studies before intra/inter species members [primer design for closely related species]. |
---|